BIO-GEEC: GERMAN-ECUADORIAN BIODIVERSITY CONSORTIUM<br>
Establishing barcoding pipelines for biological systems of public and economic relevance.
<br><br>
Ecuador is a megadiverse country and all ecoregions of the country belong to one of the “hottest” global biodiversity hotspots, meaning that the very high levels of species endemism contrast with extreme levels of habitat destruction. Major challenges will be to restore the biodiversity and ecosystem functioning in lost or disturbed habitats of human relevance, especially in the Andean mountain ecosystems (e. g. cloud forests or páramos). The páramo, for example, serves as a major carbon storage medium and provided drinking water for Ecuador’s human population. In this project, four German institutions and four Ecuadorian universities (17 scientists in total) are forming the German-Ecuadorian Biodiversity Consortium (BIO-GEEC) that has three major objectives.
<br><br>
First, we will develop a rapid pipeline for the genetic identification and characterization of organismic groups with public and/or economic relevance. We establish the physical infrastructure, databases, IT protocols and a Web App (EcBioDiv) for a comprehensive barcoding workflow, and transfer the skills and tools available in Germany to our partnering institutions in Ecuador.
<br><br>
Second, we will implement and test this infrastructure in four sub-projects (SP) that address patterns of biodiversity in taxa and tissue of high relevance: seed plants (tissue, seeds & pollen), pollinating insects, venomous arachnids, and soil microorganisms. Third, we will generate an international network for reciprocal training and exchange. This is particularly aimed at early career researchers that will transfer these skills to practical enterprises and careers in research, government bodies, and industry. Within the SPs, we will be analyzing important aspects of microbiomes diversity (SP6) and seed biology (SP3), thereby paving the way to practical rehabilitation programs, but also providing a foundation for commercial enterprises such as plant nurseries (SP3) or biomedical research (SP6).
<br><br>
We will also compile a comprehensive library of palm pollinators and palm floral visitors and thus establish a complete network of palm species, their pollinators, and pollen for practical agriculture, farming and bioprospecting (SP4). We will further barcode venomous arachnids to allow for improved human health services and venom bioprospection (SP5). To achieve this in a collaborative effort, we selected a specific transect near Tena (Napo Province) that allows coordinated research in all subprojects in one transect, ranging from tropical rain forest at low elevation to páramo habitats in high altitudes.
<br><br>
Several joint activities (e.g. a summer school and joint thesis supervision) will foster the nascent network. Once the molecular routines and informatic pipeline components have been established in Ecuador, BIO-GEEC will facilitate the biodiversity research for the Ecuadorian partners and the German institutions, since barriers for material and data exchange will be significantly lowered. German partners will benefit from the resources in terms of new project design, biodiversity analyses, biomonitoring and modelling.
<br><br>
Ecuadorian partners will benefit from the physical infrastructure, new molecular skills and methodologies, and international training. We will implement BIO-GEEC to serve as an umbrella for future biodiversity research projects in Ecuador involving molecular data. Once implemented and functional, the network will be expanded to further facilitate exchange, data access and collaborative research across institutions and country borders. BIO-GEEC is also intended to serve as a stepping stone for a larger joint research project on Ecuadorian biodiversity with our new partners, and generate the necessary data and infrastructure to compete for funding from other (e.g. the Deutsche Forschungsgemeinschaft, DFG) sources after this call has ended.
此資源出現紀錄的資料已發佈為達爾文核心集檔案（DwC-A），其以一或多組資料表構成分享生物多樣性資料的標準格式。
核心資料表包含 112 筆紀錄。
亦存在 4 筆延伸集的資料表。延伸集中的紀錄補充核心集中紀錄的額外資訊。 每個延伸集資料表中資料筆數顯示如下。
ExtendedMeasurementOrFact
112
此 IPT 存放資料以提供資料儲存庫服務。資料與資源的詮釋資料可由「下載」單元下載。「版本」表格列出此資源的其它公開版本，以便利追蹤其隨時間的變更。
研究者應依照以下指示引用此資源。:
Dupérré N, Crespo-Pérez V, Harms D, Tapia E, Dietmar Q, Duperre N (2023). Obtención de los códigos de barras genéticos de ADN de especies de arácnidos en los ecosistemas forestales de montaña del Ecuador organizados en una plataforma digital a través de una aplicación web para estudios de biodiversidad.. Version 2.0. Museo de Zoología QCAZ de la PUCE. Occurrence dataset. https://doi.org/10.60545/sbpk0b
Spider; diversity; dna-barcoding; Taxonomy; Ecuador; Metadata; Occurrence
Ecuador
| 界定座標範圍 |
緯度南界 經度西界 [-5, -82], 緯度北界 經度東界 [2, -75] |
| 起始日期 / 結束日期 |
2020-12-11 / 2023-12-11 |
Establishing barcoding pipelines for biological systems of public and economic relevance.
| 計畫名稱 |
Obtención de los códigos de barras genéticos de ADN de especies de arácnidos en los ecosistemas forestales de montaña del Ecuador organizados en una plataforma digital a través de una aplicación web para estudios de biodiversidad. |
| 辨識碼 |
MAE-DNB-CM-2020-0130 |
| 經費來源 |
DAAD |
| 研究區域描述 |
Ecuador |
參與計畫的人員:
Samples were collected by pitfall trap in propylene-glycol and ethanol. All Arachnids were sorted and stored in 100% ethanol for DNA studies.
| 研究範圍 |
Pitfalls were set in the Paramo en Colonso-Chalupas. The trap were emptied every 10 days for 2 months. |
方法步驟描述:
-
Specimens were studied under a microscope for identification. The third leg on the left side was detached and sent for sequencing.
https://orcid.org/0000-0003-2195-878X