Obtención de los códigos de barras genéticos de ADN de especies de arácnidos en los ecosistemas forestales de montaña del Ecuador organizados en una plataforma digital a través de una aplicación web para estudios de biodiversidad.

Occurrence
Versão mais recente published by Pontificia Universidad Católica del Ecuador on nov. 10, 2023 Pontificia Universidad Católica del Ecuador
Início:
https://bioweb.puce.edu.ec/QCAZ/
Publication date:
10 de novembro de 2023
Licença:
CC-BY-NC 4.0

Baixe a última versão do recurso de dados, como um Darwin Core Archive (DwC-A) ou recurso de metadados, como EML ou RTF:

Dados como um arquivo DwC-A download 112 registros em English (23 KB) - Frequência de atualização: quando necessário
Metadados como um arquivo EML download em English (18 KB)
Metadados como um arquivo RTF download em English (13 KB)

Descrição

BIO-GEEC: GERMAN-ECUADORIAN BIODIVERSITY CONSORTIUM<br> Establishing barcoding pipelines for biological systems of public and economic relevance. <br><br> Ecuador is a megadiverse country and all ecoregions of the country belong to one of the “hottest” global biodiversity hotspots, meaning that the very high levels of species endemism contrast with extreme levels of habitat destruction. Major challenges will be to restore the biodiversity and ecosystem functioning in lost or disturbed habitats of human relevance, especially in the Andean mountain ecosystems (e. g. cloud forests or páramos). The páramo, for example, serves as a major carbon storage medium and provided drinking water for Ecuador’s human population. In this project, four German institutions and four Ecuadorian universities (17 scientists in total) are forming the German-Ecuadorian Biodiversity Consortium (BIO-GEEC) that has three major objectives. <br><br> First, we will develop a rapid pipeline for the genetic identification and characterization of organismic groups with public and/or economic relevance. We establish the physical infrastructure, databases, IT protocols and a Web App (EcBioDiv) for a comprehensive barcoding workflow, and transfer the skills and tools available in Germany to our partnering institutions in Ecuador. <br><br> Second, we will implement and test this infrastructure in four sub-projects (SP) that address patterns of biodiversity in taxa and tissue of high relevance: seed plants (tissue, seeds & pollen), pollinating insects, venomous arachnids, and soil microorganisms. Third, we will generate an international network for reciprocal training and exchange. This is particularly aimed at early career researchers that will transfer these skills to practical enterprises and careers in research, government bodies, and industry. Within the SPs, we will be analyzing important aspects of microbiomes diversity (SP6) and seed biology (SP3), thereby paving the way to practical rehabilitation programs, but also providing a foundation for commercial enterprises such as plant nurseries (SP3) or biomedical research (SP6). <br><br> We will also compile a comprehensive library of palm pollinators and palm floral visitors and thus establish a complete network of palm species, their pollinators, and pollen for practical agriculture, farming and bioprospecting (SP4). We will further barcode venomous arachnids to allow for improved human health services and venom bioprospection (SP5). To achieve this in a collaborative effort, we selected a specific transect near Tena (Napo Province) that allows coordinated research in all subprojects in one transect, ranging from tropical rain forest at low elevation to páramo habitats in high altitudes. <br><br> Several joint activities (e.g. a summer school and joint thesis supervision) will foster the nascent network. Once the molecular routines and informatic pipeline components have been established in Ecuador, BIO-GEEC will facilitate the biodiversity research for the Ecuadorian partners and the German institutions, since barriers for material and data exchange will be significantly lowered. German partners will benefit from the resources in terms of new project design, biodiversity analyses, biomonitoring and modelling. <br><br> Ecuadorian partners will benefit from the physical infrastructure, new molecular skills and methodologies, and international training. We will implement BIO-GEEC to serve as an umbrella for future biodiversity research projects in Ecuador involving molecular data. Once implemented and functional, the network will be expanded to further facilitate exchange, data access and collaborative research across institutions and country borders. BIO-GEEC is also intended to serve as a stepping stone for a larger joint research project on Ecuadorian biodiversity with our new partners, and generate the necessary data and infrastructure to compete for funding from other (e.g. the Deutsche Forschungsgemeinschaft, DFG) sources after this call has ended.

Registros de Dados

Os dados deste recurso de ocorrência foram publicados como um Darwin Core Archive (DwC-A), que é o formato padronizado para compartilhamento de dados de biodiversidade como um conjunto de uma ou mais tabelas de dados. A tabela de dados do núcleo contém 112 registros.

Também existem 4 tabelas de dados de extensão. Um registro de extensão fornece informações adicionais sobre um registro do núcleo. O número de registros em cada tabela de dados de extensão é ilustrado abaixo.

Occurrence (core)
112
Permit 
112
Preparation 
112
dnaDerivedData 
112
ExtendedMeasurementOrFact 
112

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Versões

A tabela abaixo mostra apenas versões de recursos que são publicamente acessíveis.

Como citar

Pesquisadores deveriam citar esta obra da seguinte maneira:

Dupérré N, Crespo-Pérez V, Harms D, Tapia E, Dietmar Q, Duperre N (2023). Obtención de los códigos de barras genéticos de ADN de especies de arácnidos en los ecosistemas forestales de montaña del Ecuador organizados en una plataforma digital a través de una aplicación web para estudios de biodiversidad.. Version 2.0. Museo de Zoología QCAZ de la PUCE. Occurrence dataset. https://doi.org/10.60545/sbpk0b

Direitos

Pesquisadores devem respeitar a seguinte declaração de direitos:

O editor e o detentor dos direitos deste trabalho é Pontificia Universidad Católica del Ecuador. This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC 4.0) License.

GBIF Registration

Este recurso foi registrado no GBIF e atribuído ao seguinte GBIF UUID: 39c2d84a-4a44-4b19-afda-34124377957d.  Pontificia Universidad Católica del Ecuador publica este recurso, e está registrado no GBIF como um publicador de dados aprovado por GBIF Ecuador.

Palavras-chave

Spider; diversity; dna-barcoding; Taxonomy; Ecuador; Metadata; Occurrence

Contatos

Nadine Dupérré
  • Originador ●
  • Ponto De Contato
  • Collection Manager-Arachnology
LIB-Leibniz Institute for the Analysis of Biodiversity Change
DE
Veronica Crespo-Pérez
  • Originador ●
  • Ponto De Contato
  • Curator
Museo de Zoologia-QCAZ
EC
Danilo Harms
  • Originador
  • Curator
LIB-Leibniz Institute for the Analysis of Biodiversity Change
DE
Elicio Tapia
  • Originador
OTONGA foundation
EC
Quandt Dietmar
  • Originador
  • Professor
Nees Institute for Plant Biodiversity, University of Bonn.
Nadine Duperre
  • Pesquisador Principal
  • Collection Manager-Arachnology
LIB-Leibniz Institute for the Analysis of Biodiversity Change
Nadine Duperre
  • Pesquisador Principal
LIB-Leibniz Institute for the Analysis of Biodiversity Change
DE
Verónica Crespo-Pérez
  • Pesquisador Principal
QCAZ
EC

Cobertura Geográfica

Ecuador

Coordenadas delimitadoras Sul Oeste [-5, -82], Norte Leste [2, -75]

Cobertura Temporal

Data Inicial / Data final 2020-12-11 / 2023-12-11

Dados Sobre o Projeto

Establishing barcoding pipelines for biological systems of public and economic relevance.

Título Obtención de los códigos de barras genéticos de ADN de especies de arácnidos en los ecosistemas forestales de montaña del Ecuador organizados en una plataforma digital a través de una aplicación web para estudios de biodiversidad.
Identificador MAE-DNB-CM-2020-0130
Financiamento DAAD
Descrição da Área de Estudo Ecuador

O pessoal envolvido no projeto:

Elicio Tapia
  • Autor
Danilo Harms
  • Pesquisador Principal
Dietmar Quandt
  • Pesquisador Principal

Métodos de Amostragem

Samples were collected by pitfall trap in propylene-glycol and ethanol. All Arachnids were sorted and stored in 100% ethanol for DNA studies.

Área de Estudo Pitfalls were set in the Paramo en Colonso-Chalupas. The trap were emptied every 10 days for 2 months.

Descrição dos passos do método:

  1. Specimens were studied under a microscope for identification. The third leg on the left side was detached and sent for sequencing.

Dados de Coleção

Nome da Coleção QCAZ
Métodos de preservação do espécime Álcool

Metadados Adicionais